Publications

For most recent and complete listing of publications, click here.

Refereed Articles · Book Chapters · Non-Refereed Articles · Abstracts

To request a hard-copy reprint, email neviny@umn.edu.

Refereed Articles (through 2014):

  1. Bao Y, Vuong T, Meinhardt C, Tiffin P, Denny R, Chen R, Nguyen HT, Orf JH, Young ND (2014) Potential of association mapping and genomic selection to explore PI88788 derived soybean cyst nematode resistance. The Plant Genome (73) doi:10.3835/plantgenome2013.11.0039.
  2. Bonhomme M, André O, Badis Y, Ronfort J, Burgarella C, Chantret N, Prosperi J-M, Briskine R, Mudge J, Debéllé F, Navier H, Miteul H, Hajri A, Baranger A, Tiffin P, Dumas B, Pilet-Navel M-L, Young ND, Jacquet C (2014) High density genome-wide association mapping implicates an F-box encoding gene in Medicago truncatula resistance Aphanomyces euteiches. New Phytologist: 201(4): 1328-1342: doi: 10.1111/nph.12611.
  3. Nallu S, Silverstein KAT, Zhou P, Young, ND, VandenBosch KA (2014) Patterns of divergence of a large family of nodule cysteine-rich genes in accessions of Medicago truncatula. The Plant Journal 78: 697-705, doi:10.1111/tpj.12506.
  4. Yoder JB, Stanton-Geddes J, Zhou P, Briskine R, Young ND, Tiffin P (2014) Genomic signature of local adaptation to climate in Medicago truncatula. Genetics 196(4):1263-75 doi: 10.1534/genetics.113.159319. (Faculty of 1000 Prime: http://f1000.com/prime/718243310?key=K7KxwGH8X8aQ73R)
  5. Paape T, Bataillon T, Zhou P, Kono T, Briskine R, Young ND, Tiffin P (2013) Selection, genome wide fitness effects, and evolutionary rates in the model legume Medicago truncatula. Molecular Ecology 22(13): 3525-3538. doi: 10.1111/mec.12329.
  6. Stanton-Geddes J, Yoder J, Briskine R, Young ND, Tiffin P (2013) Estimating heritability with whole-genome data. Methods in Ecology and Evolution: doi: 10.1111/2041-210X.12129.
  7. Stanton-Geddes J, Paape T, Epstein B, Briskine R, Yoder, J, Mudge J, Bharti AK, Farmer AD, Zhou P, Denny R, May GD, Erlandson S, Sugawara M, Sadowsky MJ, Young ND, Tiffin P (2013) Candidate genes and genetic architecture of symbiotic and agronomic traits revealed by whole-genome, sequence-based association genetics in Medicago truncatula. PLoS ONE 8(5): e65688. doi:10.1371/journal.pone.0065688.
  8. Sugawara M, Epstein B, Badgley B, Unno T, Xu L , Reese J, Gyaneshwar P, Denny R, Mudge J, Bharti AK, Farmer AD, May GD, Woodward JE, Médigue C, Vallenet D, Lajus A, Rouy Z, Martinez-Vaz B, Tiffin P, Young ND, Sadowsky MJ (2013) Comparative genomics of the core and accessory genomes of 48 Sinorhizobium strains spanning five genospecies. Genome Biology 14(2):R17, doi:10.1186/gb-2013-14-2-r17.
  9. Yoder JB, Briskine, R, Mudge J, Farmer A, Paape T, Steel K, Weiblen GD, Bharti A, Zhou P, May GD, Young ND, Tiffin P (2013) Phylogenetic signal variation in the genomes of the genus Medicago (Fabaceae). Systematic Biology: doi:10.1093/sysbio/syt009. Ashfield T, Egan AN, Pfeil BE, Chen NWG, Podicheti R, Ratnaparkhe MB, Ameline-Torregrosa C, Denny R, Cannon S, Doyle JJ, Geffroy V, Roe BA, Saghai Maroof MA, Young ND, Innes RW (2012) Evolution of a complex disease resistance gene cluster in diploid Phaseolus and tetraploid Glycine. Plant Physiology 159: 344-354.
  10. Epstein B, Branca A, Mudge J, Bharti AK, Briskine R, Farmer A, Sugawara M, Young ND, Sadowsky MJ, Tiffin P (2012) Population genomics of the facultatively mutualistic bacteria Sinorhizobium meliloti and S. medicae. PLoS Genetics 8(8): e1002868. doi:10.1371/journal.pgen.1002868.
  11. Paape T, Zhou P, Branca A, Briskine R, Young ND, Tiffin P (2012) Fine scale population recombination rates, hotspots and correlates of recombination in the Medicago truncatula genome. Genome Biology and Evolution 4: 726-737.
  12. Young ND, Bharti AK (2012) Genome-enabled insights into legume biology. Annual Review of Plant Biology 12: 193-201.
  13. Branca A, Paape T, Zhou P, Briskine R, Farmer AD, Mudge J, Bharti AK, Woodward JE, May GD, Gentzbittel L, Ben C, Denny R, Sadowsky MJ, Ronfort J, Bataillon T, Young ND, Tiffin P (2011) Whole-genome nucleotide diversity, recombination, and linkage-disequilibrium in the model legume Medicago truncatula. Proceedings National Academy Sciences USA 108: E864-870.
  14. Young ND, Debellé F, Oldroyd GE, Geurts R, Cannon SB, Udvardi MK, Benedito VA, Mayer KFX, Gouzy J, Schoof H, et al. (2011) The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, doi:10.1038/nature10625.
  15. Young, ND and Udvardi M (2009) Translating Medicago truncatula genomics to crop legumes. Current Opinion in Plant Biology 12: 193-201.
  16. Ameline-Torregrosa, C., Cazaux, M., Danesh, D., Chardon, F., Cannon, S.B., Esquerré-Tugayé, M.T, Dumas. B., Young, N.D., Samac, D.A., Huguet. T., Jacquet, C. (2008) Genetic dissection of resistance to anthracnose and powdery mildew in Medicago truncatula. Molecular Plant-Microbe Interaction 21:61-69.
  17. Ameline-Torregrosa, C., Wang, B.-B., Denny, R.L., O'Bleness, M., Despande, S., Zhu, H., Roe, B., Young, N.D., Cannon, S.B. (2008) Identification and characterization of NBS-LRR encoded genes in the model plant Medicago truncatula. Plant Physiology, 146:5-21
  18. Hyten, D.L., Song, Q., Choi, I.-Y., Yoon. M.-S., Specht. J.E., Matukumalli, L.K,, Nelson. R.L., Shoemaker, R.C., Young, N.D., Cregan, P.B. (2008) High-throughput genotyping with the GoldenGate assay in the highly complex genome of soybean. Theoretical and Applied Genetics 116(7):945-52.
  19. Innes R.W., Ameline-Torregrosa C., Ashfield T., Cannon E., Cannon S.B., Chacko B., Chen N.W., Couloux A., Dalwani A., Denny R., Deshpande S., Egan A.N., Glover N., Hans C.S., Howell S., Ilut D., Jackson S., Lai H., Mammadov J., Campo S.M., Metcalf M., Nguyen A., O'Bleness M., Pfeil B.E., Podicheti R., Ratnaparkhe M.B., Samain S., Sanders I., Segurens B., Sevignac M., Sherman-Broyles S., Thareau V., Tucker D.M., Walling J., Wawrzynski A., Yi J., Doyle J.J., Geffroy V., Roe B.A., Maroof M.A., Young N.D. (2008) Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean. Plant Physiology Oct 8. [Epub ahead of print]
  20. Li, L., He, H., Zhang, J., Wang, X., Bai, S., Stolc, V., Tongprasit, W., Young, N.D., Yu, O., Deng, X.W. (2008) Transcriptional analysis of highly syntenic regions between Medicago truncatula and Glycine max using tiling microarrays. Genome Biology 9(3): R57.
  21. Wang, B.B., O'Toole, M., Brendel, V., Young, N.D. (2008) Novel and conserved alternative splicing events are revealed by cross-species EST alignments in legumes. BMC Plant Biology 8:17.
  22. Wawrzynski A, Ashfield T, Chen NW, Mammadov J, Nguyen A, Podicheti R, Cannon SB, Thareau V, Ameline-Torregrosa C, Cannon E, Chacko B, Couloux A, Dalwani A, Denny R, Deshpande S, Egan AN, Glover N, Howell S, Ilut D, Lai H, Del Campo SM, Metcalf M, O'Bleness M, Pfeil BE, Ratnaparkhe MB, Samain S, Sanders I, Segurens B, Sevignac M, Sherman-Broyles S, Tucker DM, Yi J, Doyle JJ, Geffroy V, Roe BA, Maroof MA, Young ND, Innes RW. (2008) Replication of non-autonomous retroelements in soybean appears to be both recent and common. Plant Physiology Oct 24. [Epub ahead of print].
  23. Choi, I.-Y., Hyten, D.L., Specht, J.E., Matukumalli, L.K., Song, Q., Quigley, C.V., Lee, M.S., Chase, K., Lark, K.G., Reiter, R.S., Yoon, M.-S., Hwang, E.-Y., Yi, S.-I., Young, N.D., Shoemaker, R.C., van Tassell, C.P., Cregan, P.B. (2007) A soybean transcript map: Discovery and mapping of single nucleotide polymorphisms in soybean genes. Genetics 176: 685-696.
  24. Febrer, M., Cheung, F., Town, C., Cannon, S., Young, N.D., Abberton, M., Jenkins, G., Milbourne, D. (2007) Construction, characterization and preliminary BAC-end sequencing analysis of a bacterial artificial chromosome library of white clover (Trifolium repens L.). Genome 50: 412-421.
  25. Foster-Hartnett, D., Danesh, D., Penuela, S., Sharopova, N., Endre G., VandenBosch, K., Young, N.D., Samac, D. (2007) Cytological and molecular responses of Medicago truncatula to Erysiphe pisi. Molecular Plant Pathology 8: 307-319.
  26. Cannon, S.B., Sterck, L., Rombauts, S., Sato, S., Cheung, F. Gouzy, J.P., Wang, X., Mudge, J., Vasdewani, J., Schiex, T., Spannagl, M., Monaghan, E., Nicholson, C., Humphray, S.J., Schoof, H., Mayer, K.F.X., Rogers, J., Quétier, F., Oldroyd, G.E., Debellé, F., Cook, D.R., Roe, B.A., Town, C.D. Tabata, S., Van de Peer, Y., Young, N.D. (2006) Legume evolution viewed through the Medicago truncatula and Lotus japonicus genomes. Proceedings National Academy Sciences USA, 103(40):14959-64.
  27. Mun, J.-H., Kim D.-J., Choi, H.-K., Gish, J., Debellé, F., Mudge, J., Denny, R., Endré, G., Saurat, O., Dudez, A.-M., Kiss, G.B., Roe, B.A., Young, N.D., Cook D.R. (2006) Distribution of microsatellites in the genome of Medicago truncatula: A resource of genetic markers that integrate genetic and physical maps. Genetics 172: 2541-2555.
  28. Walling, J.G., Shoemaker, R.C., Young, N.D., Mudge, J., Jackson, S.A. (2006) Chromosome level homeology in paleopolyploid soybean (Glycine max) revealed through integration of genetic and chromosome maps. Genetics 172: 1893-1900.
  29. Young, N.D., Shoemaker, R.C. (2006) Model legumes: Exploring the structure, function and evolution of legume genomes. Current Opinion in Plant Biology 9: 95-98.
  30. Cannon, S.B., Crow, J.A., Heuer, M.L., Wang, X., Cannon, E.K.S., Dwan, C., Lamblin, A.F., Vasdewani, J., Mudge, J., Cook, A., Cheung, F., Kenton, S., Kunau, T.M., Brown, D., Kim, D.J., Cook, D.R., Roe, B.A., Town, C.D., Young, N.D., Retzel, E.F. (2005) Databases and information integration for the Medicago truncatula genome and transcriptome. Plant Physiology 138: 38-46.
  31. Gepts, P., Beavis, W., Brummer, E.C., Shoemaker, R.C., Stalker, H.T., Weeden, N.F., Young, N.D. (2005) Legumes as a model plant family: genomics for food and feed. Report of the Cross-legume Advances Through Genomics (CATG) Conference.  Plant Physiology 137: 1228-1235 (pdf).
  32. Lin, J.-Y., Jacobus, B. H., SanMiguel, P., Walling, J.G., Yuan, Y. Shoemaker, R.C., Young, N.D., Jackson, S.A. (2005) Centric regions of soybean (Glycine max L. Merr.) chromosomes consist of retroelements and tandemly repeated DNA and are structurally and evolutionarily labile. Genetics 170: 1221-1230.
  33. Mudge, J., Cannon. S.B., Kalo, P., Oldroyd. G.E.D., Roe, B.A., Town. C.D., Young. N.D. (2005) Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana. BMC Plant Biology 5:15.
  34. Young, N.D., Cannon, S.B., Sato, S., Kim, D.J., Cook, D.R., Town, C.D., Roe, B.A., Tabata, S. (2005) Sequencing the genespaces of Medicago truncatula and Lotus japonicus. Plant Physiology 137: 1174-1181.
  35. Cannon, S.B., Mitra A., Baumgarten, A., Young, N.D., May, G. (2004) The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biology 4:10.
  36. Choi, H.K, Mun, J.H., Kim, D.J., Zhu, H., Baek, J.M., Mudge, J., Roe, B., Ellis, T.H.N., Doyle, J., Kiss, G.B., Young, N.D., Cook, D. R. (2004) Estimating genome conservation between crop and model legume species. Proceedings National Academy Science USA 101:15289-15294.
  37. Mudge, J., Yan, H.H., Denny, R.L., Howe, D., Danesh, D., Marek, L.F., Retzel, E., Shoemaker, R.C., Young, N.D. (2004) Soybean bacterial artificial chromosome contigs anchored with RFLPs: insights into genome duplication and gene clustering Genome 47: 361-372.
  38. Pagel, J., Walling, J.G., Young, N.D., Shoemaker, R.C., Jackson, S.A. (2004) Segmental duplications within the Glycine max genome revealed by fluorescence in situ hybridization of bacterial artificial chromosomes. Genome 47: 764-768.
  39. Yan, H., Mudge, J., Kim, D.J., Shoemaker, R.C., Cook, D.R., Young, N.D. (2004) Comparative physical mapping reveals features of microsynteny between the genomes of Glycine max and Medicago truncatula. Genome 47: 141-155.
  40. Ashfield, T., Bocian, A., Held, D., Henk, A.D., Marek, L.F., Danesh, D., Penuela, S., Meksem, K., Lightfoot, D.A., Young, N.D., Shoemaker, R.C., Innes, R.W. (2003) Genetic and physical mapping of the soybean Rpg1-b disease resistance gene reveals a complex locus containing several tightly linked families of NBS-LRR-genes. Molecular Plant-Microbe Interactions 16:817-26.
  41. Cannon, S.B., Kozik, A., Chan, B., Michelmore, R., Young, N.D. (2003) DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology-discovery, and visualization. Genome Biology 4:R68.
  42. Cannon, S.B., McCombie, W.R., Sato, S., Tabata, S., Denny, R., Palmer, L., Katari, M., Young, N.D., Stacey, G. (2003) Evolution and microsynteny of the apyrase gene family in three legume genomes. Molecular Genetics and Genomics 270: 347-361.
  43. Cannon, S.B., Young, N.D. (2003) OrthoParaMap: Distinguishing orthologs from paralogs by integrating comparative genome data and gene phylogenies. BMC Bioinformatics 4:35.
  44. Lamblin, A., Crow, J., Johnson, J., Silverstein, K., Kunau, T., Kilian, A., Benz, D., Stromvik, M., Endre, G., VandenBosch, V., Cook, D., Young, N.D., Retzel, E. (2003) MtDB: A database for personalized data mining of the model legume Medicago truncatula. Nucleic Acids Research31: 196-201.
  45. Yan, H., Mudge, J., Kim, D.J., Shoemaker, R.C., Cook, D.R., Young, N.D. (2003) Estimates of conserved microsynteny among the genomes of Glycine max, Medicago truncatula and Arabidopsis thaliana. Theoretical and Applied Genetics106: 1256-1265.
  46. Young, N.D., Mudge, J., Ellis, T.H.N. (2003) Legume genomes: more than peas in a pod. Current Opinion in Plant Biology6: 199-204.
  47. Zhu, Y.L., Song, Q.J., Hyten, D.L., VanTassell, C.P., Matukumalli, L.K., Grimm, D.R., Hyatt, S.M., Fickus, E.W., Young, N.D., Cregan, P.B. (2003) Single nucleotide polymorphisms (SNPs) in soybean. Genetics 163: 1123-1134.
  48. Cannon, S.B., Zhu, H., Baumgarten, A.M., Spangler, R., May, G., Cook, D.R., Young, N.D. (2002) Diversity, distribution, and ancient taxonomic relationships within the TIR and non-TIR NBS-LRR resistance gene subfamilies. Journal of Molecular Evolution54:548-562.
  49. Foster-Hartnett, D., Mudge, J., Danesh, D., Yan, H., Larsen, D., Denny, R., Young, N.D. (2002) Comparative genomic analysis of sequences sampled from a small region on soybean molecular linkage group 'G'. Genome 45:634-645.
  50. Peñuela, S., Danesh, D., Young, N.D. (2002) Targeted isolation, sequence analysis, and physical mapping of nonTIR NBS-LRR genes in soybean. Theoretical and Applied Genetics104:261-272.
  51. Zhu, H., Cannon, S., Young, N.D. Cook, D. R. (2002) Phylogeny and genomic organization of the TIR and non-TIR NBS-LRR resistance gene family in Medicago truncatula. Molecular Plant-Microbe Interaction15:529-539.
  52. Chen, S. Y., Orf, J.H., Reese, C.D., Porter, P.M., Stienstra, W.C., Young, N.D., Walgenbach D., Schaus, P.J., Arlt, T.J., Breitenbach, F.R. (2001) Soybean cyst nematode population development and associated soybean yields of resistant and susceptible cultivars in Minnesota. Plant Disease, 85:760-766.
  53. Cohn,J., Ramu, S., Uhm, T., Nam, Y.W., Kim D.J., Penmetsa, V., Wood, T., Cook, D., Denny, R., Young, N.D., Stacey, G. (2001) Differential regulation of a family of apyrase genes from Medicago truncatula. Plant Physiology125:2104-2119.
  54. Marek, L.F., Mudge, J., Darnielle, L., Grant, D., Hanson, N., Paz, M., Huihuang, Y., Denny, R., Larson, K., Foster-Hartnett, D., Cooper, A., Danesh, D., Larsen, D., Schmidt, T., Staggs, R., Crow, J.A., Retzel, E., Young, N.D., Shoemaker, R.C. (2001) Soybean genomic survey: BAC-end sequences near RFLP and SSR markers. Genome 44: 472-581.
  55. Day, R.B., McAlvin, C.B., Loh. J.T., Denny, R. L., Wood, T.C., Young, N.D., Stacey, G. (2000) Differential expression of two soybean apyrases; one of which is an early nodulin. Molecular Plant-Microbe Interactions 13:1053-1070.
  56. Young, N. D. (2000) The genetic architecture of resistance. Current Opinion in Plant Biology3: 285-290.
  57. Cregan, P., Mudge, J., Fickus, E.W., Danesh, D., Denny, R.L., Young, N. D. (1999) Two simple sequence repeats to select for soybean cyst nematode resistance conditioned by the rhg1 locus. Theoretical and Applied Genetics 99: 811-818.
  58. Cregan, P., Mudge, J., Fickus, E.W., Marek, L.F., Danesh, D., Denny, R. Shoemaker, R.C., Matthews, B., Young, N.D. (1999) Targeted isolation of simple sequence repeat markers through the use of bacterial artificial chromosomes. Theoretical and Applied Genetics 98: 919-928.
  59. Meyers, B.C., Dickerman, A.W., Michelmore, R.W., Pecherer, R.M., Sivaramakrishnan, S., Sobral, B.W., Young, N.D. (1999) Plant disease resistance genes encode members of an ancient and diverse protein family within the nucleotide-binding superfamily. Plant Journal20: 317-332.
  60. Narayanan, R.A., Atz, R., Denny, R.L., Young, N.D., Somers, D.A. (1999) Expression of soybean cyst nematode resistance in transgenic hairy roots of soybean. Crop Science 39:1680-1686.
  61. Young, N. D. (1999) A cautiously optimistic vision for marker-assisted breeding. Molecular Breeding 5: 505-510.
  62. Danesh, D., Peñ uela, S., Mudge, J., Denny, R.L., Nordstrom, H., Martinez, J.P., Young, N.D. (1998). A bacterial artificial chromosome library for soybean and identification of clones near a major cyst nematode resistance gene. Theoretical and Applied Genetics 96: 196-206
  63. Lange, D.A., Peñuela, S., Denny, R.L., Mudge, J., Orf, J.H., Young, N.D. (1998) A plant DNA isolation protocol suitable for polymerase chain reaction marker-assisted selection. Crop Science 38: 217-220.
  64. Concibido, V.C., Lange, D.A., Denny, R.L., Orf, J.H., Young, N.D. (1997) Genome mapping of soybean cyst nematode resistance loci in 'Peking', PI 90763, and PI 88788 using DNA markers. Crop Science 37:258-264.
  65. Mudge, J., Cregan, P.B., Kenworthy, J.P., Kenworthy, W.J., Orf, J.H. Young, N.D. (1997) Two microsatellite markers that flank the major soybean cyst nematode resistance locus. Crop Science: 37:1611-1615.
  66. Concibido, V.C., Denny, R.L., Lange, D.A., Orf, J.H., Young, N.D. (1996) RFLP mapping and marker-assisted selection of soybean cyst nematode resistance in PI 209332. Crop Science: 36: 1643-1650.
  67. Concibido, V.C., Young, N.D., Lange, D., Denny, R.L., Danesh, D., Orf, J.H. (1996) Targeted comparative genome analysis and qualitative mapping of a major partial resistance gene to soybean cyst nematode. Theoretical and Applied Genetics 93: 234-241.
  68. Larkin, J. , Young, N.D., Prigge, M., Marks, D.M. (1996) The control of trichome spacing and number in Arabidopsis. Development 122: 997-1005.
  69. Martinez, J.P., Groth, J., Young, N.D. (1996) Non-Mendelian and skewed segregation of DNA markers in wide crosses of the bean rust fungus, Uromyces appendiculatus. Current Genetics: 29: 159-167.
  70. Myers, G., Fatokun, C.A., Young, N.D. (1996) RFLP mapping of an aphid resistance gene in cowpea (Vigna unguiculata L. Walp.) Euphytica: 91: 181-187.
  71. Shoemaker, R.C., Polzin, K., Labate, J., Specht, J., Brummer, E.C., Olson, T., Young, N.D., Concibido, V., Wilcox, J., Tamulonis, J.P., Kochert, G., Boerma, H.R. (1996) Genome duplication in soybean (Glycine subgenus soja). Genetics: 144: 329-338.
  72. Young, N.D. (1996) QTL mapping and complex disease resistance in plants. Annual Review of Phytopathology34: 479-501.
  73. Boutin, S.R., Young, N.D., Lorenzen, L., Shoemaker, R. (1995) Color DNA marker pedigrees and graphical genotypes generated by Supergene software. Crop Science: 35: 1703-1707.
  74. Boutin, S.R., Young, N.D., Olson, T., Yu, Z.-H., Shoemaker, R., Vallejos, C. (1995) Genome conservation among three legume genera detected with DNA markers. Genome 38: 928-937.
  75. Lorenzen, L., Boutin, S.R., Young, N.D., Specht, J., Shoemaker, R. (1995) Soybean pedigree analysis using map-based molecular markers I. Tracking RFLP markers in cultivars. Crop Science: 35: 1326-1336.
  76. Concibido, V.C., Denny, R.L., Boutin, S.R., Hautea, R., Orf, J.H., Young, N.D. (1994) DNA marker analysis of loci underlying resistance to soybean cyst nematode (Heterodera glycinea Ichinohe). Crop Science 34: 240-246.
  77. Danesh, D., Aarons, S., McGill, G., and Young, N.D. (1994) Genetic dissection of oligogenic resistance to bacterial wilt in tomato. Molecular Plant-Microbe Interactions7: 464-471.
  78. Fatokun, C.A, Danesh, D., Young, N.D., Stewart, E. (1993) Molecular taxonomic relationships in the genus Vigna based on RFLP analysis. Theoretical and Applied Genetics 86: 97-104.
  79. Menancio-Hautea, D., Fatokun, C.A., Kumar, L., Danesh, D., Young, N.D. (1993) Comparative genome analysis of mungbean (Vigna radiata (L.) Wilczek) and cowpea (V. unguiculata (L.) Walpers) using RFLP mapping data. Theoretical and Applied Genetics 86: 797-810.
  80. Young, N.D. (1993) Applications of DNA genetic markers to the study of plant growth and development. Plant Growth Regulation 12: 229-236.
  81. Young, N.D., Danesh, D., Menancio-Hautea, D., and Kumar, L. (1993) Mapping oligogenic resistance to powdery mildew in mungbean with RFLPs. Theoretical and Applied Genetics 87: 243-249.
  82. Fatokun, C.A., Menancio-Hautea, D., Danesh, D., Young, N.D. (1992) Evidence for orthologous seed weight genes in cowpea and mungbean based on RFLPs. Genetics 132:841-846.
  83. Young, N.D. (1992) Restriction fragment length polymorphisms (RFLPs) and crop improvement. Experimental Agriculture 28: 385-397.
  84. Young, N.D., Kumar, L., Menancio-Hautea, D., Danesh, D., Talekar, N., Shanmugasundarum, S., Kim, D. (1992) RFLP mapping of a major bruchid resistance gene in mungbean (Vigna radiata, L. Wilczek). Theoretical and Applied Genetics 84:839-844.
  85. Young, N.D. (1990) Potential applications of map-based cloning to plant pathology. Physiological and Molecular Plant Pathology 37: 81-94.
  86. Tanksley, S.D., Ganal, M., Prince, J., de Vicente, M., Bonierbale, M., Broun, P., Fulton, T., Giovannoni, J., Grandillo, S., Martin, G., Messeguer, R., Miller, J., Miller, L., Paterson, A., Pineda, O., Röder, M., Wing, R., Wu, W., Young, N.D. (1992) High density molecular linkage maps of the tomato and potato genomes. Genetics 132: 1141-1160.
  87. Messeguer, R., Ganal, M., deVicente, M., Young, N.D., Bolkan, H., Tanksley, S.D. (1991) High resolution RFLP map around the root knot nematode resistance gene (Mi) in tomato. Theoretical and Applied Genetics 82: 529-536.
  88. Ganal, M., Young, N.D., Tanksley, S.D. (1989) Analysis of the Tm-2 region of tomato by pulsed field gel electrophoresis. Molecular and General Genetics 215: 394-400.
  89. Tanksley, S., Young, N.D., Paterson, A., Bonierbale, M. (1989) RFLP mapping in plant breeding: New tools for an old science. Bio/Technology 7: 257-263.
  90. Young, N.D., Tanksley, S.D. (1989) RFLP Analysis of the size of chromosomal segments retained around the Tm-2 locus of tomato during backcross breeding. Theoretical and Applied Genetics 77:353-359.
  91. Young, N.D., Tanksley, S.D. (1989) Restriction fragment length polymorphism maps and the concept of graphical genotypes. Theoretical and Applied Genetics 77: 95-101.
  92. Young, N.D., Zamir, D., Ganal, M., Tanksley, S.D. (1988) Use of isogenic lines and simultaneous probing to identify DNA markers tightly linked to the Tm-2a gene in tomato. Genetics 120: 579-585.
  93. Hills, G.J., Plaskitt, K.A., Young, N.D., Dunigan, D.D., Watts, J.W., Wilson, T.M., Zaitlin, M. (1987) Immunogold localization of the intracellular sites of structural and nonstructural tobacco mosaic virus proteins. Virology. 161: 488-96.
  94. Young, N.D., Forney, J., Zaitlin, M. (1987) Tobacco mosaic virus replicase and replicative structures. Journal of Cell Science (Supplement) 7: 277-285.
  95. Young, N.D., Miller, J., Tanksley, S.D. (1987) Rapid chromosomal assignment of multiple genomic clones in tomato using primary trisomics. Nucleic Acids Research 15: 9339-9348.
  96. Young, N.D., Zaitlin, M. (1986) An analysis of tobacco mosaic virus replicative structures synthesized in vitro. Plant Molecular Biology 6: 455-465.
  97. Young, N.D., Galston, A.W. (1985) Control of arginine decarboxylase biosynthesis in stress oat leaf segments, in: Recent Progress in Polyamine Research. L Selmeci, ed. pp. 527-535.
  98. Young, N.D., Galston, A.W. (1984) Physiological control of arginine decarboxylase activity in K-deficient oat shoots. Plant Physiology 76: 331-335.
  99. Young, N.D., Galston, A.W. (1983) Putrescine and acid stress: Induction of arginine decarboxylase and putrescine accumulation by low pH. Plant Physiology 71: 767-771.
  100. Kolega, J., Shure, M.S., Chen, W.T., Young, N.D. (1982) Rapid cellular translocation is related to close contacts formed between various cultured cells and their substrata. Journal of Cell Science 54: 23-34.

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Book Chapters:

  1. Mayer, K., Gouzy, J., Küster, H., May, G.D., Retzel, E., Young, N.D. (2006) Bioinformatics resources for Medicago truncatula. The Medicago truncatula Handbook, U. Mathesius, ed.
  2. Young, N.D. (2004) Comparative genetics of Arabidopsis thaliana, Glycine max, Medicago truncatula, and other legume genomes. In: Legume Crop Genomics. American Oil Chemistry Society, Champaign, IL, pp 162-169.
  3. Cannon, S., Young, N. D. (2003) Evolution and Genomic Architecture of Plant NBS-LRRs. In: Plant-Microbe Interactions 6th Edition, G. Stacey and N. T. Keen, eds. APS Press, St. Paul, MN.
  4. Young, N.D., Mudge, J. (2002) Marker-assisted selection for soybean cyst nematode resistance. In: Plant Resistance to Parasitic Nematodes, J. L. Starr, R. Cook, J. Bridge, eds. CABI Publishing, Wallingford, Oxon, UK, pp. 241-253.
  5. Young, N.D. (2001) Constructing a genetic linkage map with DNA markers, in: DNA-Based Markers in Plants 2nd Edition. R. Phillips and I. Vasil, eds. Kluwer Academic Publishers, Dordrecht, Netherlands, pp. 31-48.
  6. Fatokun, C., Young, N.D., Myers, G. (1997) Molecular markers and genome mapping in cowpea, in: Advances in Cowpea Research, B. Singh, D. Mohan Raj, K. Dashiel, L. Jackai, eds. pp.352-360.
  7. Young, N.D., Weeden, N., Kochert, G. (1996) Genome mapping in legumes, in: Genome Mapping in Plants, A. Paterson, ed. Landes Biomedical Press, Austin, TX. pp. 212-227.
  8. Young, N.D. (1995) Isolation and cloning of plant disease resistance genes, in: Advanced Methods in Plant Pathology, U. Singh and R. Singh, eds. CRC Press, Boca Raton, FL. pp. 221-234.
  9. Young, N.D. (1994) Constructing a genetic linkage map with DNA markers, in: DNA-Based Markers in Plants. R. Phillips and I. Vasil, eds. Kluwer Academic Publishers, Dordrecht, Netherlands, pp. 39-57.
  10. Young, N.D. (1994) Plant gene mapping, in: Encyclopedia of Agricultural Science. C. Arntzen, ed. Academic Press, San Diego. pp.275-282.
  11. Young, N.D., Danesh, D. (1993) Understanding bacterial wilt resistance in tomato through the use of DNA genetic markers, in: Bacterial Wilt, C. Hayward and G. Hartman, eds. CAB International Press, Wallingford, U.K., pp. 145-155.
  12. Young, N.D., Fatokun, C.A., Danesh, D., Menancio-Hautea, D. (1992) RFLP mapping in cowpea, in: Biotechnology: Enhancing Research on Tropical Crops in Africa. G. Thottappilly, L. Monti, D. Mohan Raj, A. Moore, eds. Technical Centre for Agricultural and Rural Cooperation (CTA) and International Institute of Tropical Agriculture, Ibadan, Nigeria, pp. 237-246.
  13. Young, N.D., Menancio-Hautea, D., Fatokun, C.A., Danesh, D. (1992) RFLP technology, crop improvement, and international agriculture, in: Biotechnology: Enhancing Research on Tropical Crops in Africa. G. Thottappilly, L. Monti, D. Mohan Raj, A. Moore, eds. Technical Centre for Agricultural and Rural Cooperation (CTA) and International Institute of Tropical Agriculture, Ibadan, Nigeria, pp. 221-230.
  14. Young, N.D., Tanksley, S.D. (1989) Graphics-based whole genome selection using RFLPs. In: Current Communications in Molecular Biology: Development and Application of Molecular Markers to Problems in Plant Genetics. T. Helentjaris, B. Burr, eds. Cold Spring Harbor Press, Cold Spring Harbor, NY, pp. 123-129.
  15. Young, N.D., Palukaitis, P., Zaitlin, M. (1987) Characterization of multimeric forms of cucumber mosaic virus satellite RNA. In: Molecular Strategies for Crop Protection. C. Arntzen, C. Ryan, eds. Alan R. Liss, New York, NY, pp. 243-252.
  16. Flores, H., Young, N.D., Galston, A.W. (1985) Polyamine metabolism and plant stress. In: Cellular and Molecular Biology of Plant Stress. J. Key, T. Kosuge, eds. Alan R. Liss, New York, NY, pp. 93-114.
  17. Young, N.D., Galston, A.W. (1985) Control of arginine decarboxylase biosynthesis in stress oat leaf segments. In: Recent Progress in Polyamine Research. L Selmeci, ed. pp. 527-535.

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Non-Refereed Articles (1989-present):

  1. Young, N.D. (2006) A reference genome for legume researchers. Grain Legumes. European Association for Grain Legumes Research. Paris, France.
  2. Young, N.D. (2005) Report of the Medicago truncatula Genomics/Informatics Workshop, Asilomar, CA, June 2005.
  3. Gepts, P. Beavis, W., Brummer, C., Shoemaker, R., Stalker, T., Weeden, N., Young, N.D. (2005) Cross-legume advances through genomics white paper. Legumes as a model plant family: Genomics for food and feed. Report of CATG meeting, Santa Fe, NM, December 2004.
  4. Young, N.D., Cannon, S. B., Roe, B. A., Town, C. D. (2004) Sequencing the gene-space of the model legume, Medicago truncatula. Proceedings of the 2nd International Conference on Legume Genomics and Genetics. Dijon, France, June, 2004.
  5. Young, N.D., Yan, H., Cannon, S., Mudge, J., Penuela. P., Larsen, D., Foster-Hartnett, D., Denny, R. (2003) An integrated view of legume genomics. NATO-Russia Workshop Model Legumes and the Application of Their Biotechnology to Crops. Norwich, U.K., September, 2002.
  6. Young, N.D. (2003) Soybean researchers pin hopes on disease resistance genes. NRI Research Highlights 2002 (pdf)
  7. Young, N.D. (2002) Book review of Plant-Microbe Interactions Vol. 5, Stacey, G. and Keen, N. eds. Quarterly Review of Biology 77(2): 205.
  8. Young, N.D. (1999) Distribution and uses of legume DNA clone resources. Radioactively Labelled DNA Probes for Crop Improvement. International Atomic Energy Agency (IAEA) Technical Document Report. (September, 1999).
  9. Peñ uela, S., Danesh, D., Foster-Hartnet, D., Young, William P., Coryell, V. H., Keim, P., Young, N.D. (1998) Protein kinases, nucleotide-binding sites, and other resistance gene analogs near rhg1, a major soybean cyst nematode resistance locus. Soybean Genetics Newsletter 25.
  10. Foster-Hartnett, D. M., Danesh, D., Penuela, S., Ped, K., Denny, R.L., Young, N. D. (1998) Evidence for microsynteny among homoeologous bacterial artificial chromosome clones of soybean. Soybean Genetics Newsletter 25.
  11. Danesh, D., Peñuela, S., Mudge, J.,Denny, R.L., Nordstrom, H., Martinez, J.P., Young, N.D. (1997) Construction and characterization of a soybean bacterial artificial chromosome (BAC) library. Soybean Genetics Newsletter 24.
  12. Orf, J.H. and Young, N.D. (1997) Registration of 'Freeborn' soybean. Crop Science.
  13. Young, N.D. (1997) Hope for curbing chemical use (Editorial). Star Tribune, January 18, 1997, p. A21.
  14. Young, N.D., Denny, R.L., Concibido, V.C., Lange, D. Orf, J.H. (1996) Marker assisted breeding in practice: RFLPs and soybean cyst nematode resistance. Proceedings of an International Symposium on the Use of Induced Mutations and Molecular Techniques for Crop Improvement. IAEA/FAO (Vienna, June 1995). p.245-251.
  15. Denny, R.L., Lange, D., Peñuela, S., Mudge, J., Orf, J.H. Young, N.D. (1996) Marker-assisted selection for soybean cyst nematode resistance. Soybean Genetics Newsletter 23: 179-182.
  16. Mudge, J., Concibido, V.C., Denny, R.L., Young, N.D. Orf, J.H. (1996) Genetic mapping of yield depression locus near a major gene for soybean cyst nematode resistance. Soybean Genetics Newsletter 23: 175-178.
  17. Concibido, V.C., Denny, R.L., Lange, D., Danesh, D., Orf, J.H., Young, N.D. (1995). The soybean cyst nematode resistance gene on linkage group G is common among sources of resistance. Soybean Genetics Newsletter. 22: 269-272.
  18. Concibido, V.C., Denny, R.L., Lange, D, Danesh, D., Orf, J.H., Young, N.D. (1995).DNA marker analysis and linkage mapping of soybean cyst nematode resistance. Proceedings of Soybean Cyst Nematode Research Conference (Ames, IA, March 1995), p. 17-20.
  19. Danesh, D., Young, N.D., Concibido, V.C., Orf, J.H. (1995). Physical mapping of DNA markers near a major soybean cyst nematode resistance locus. Soybean Genetics Newsletter. 22: 273-277.
  20. Danesh, D. and Young, N.D. (1994) Partial resistance loci for tomato bacterial wilt show differential race specificity. Tomato Genetic Cooperative Newsletter 44: 12-13.
  21. Aarons, S., Danesh, D., Young, N.D. (1993) DNA genetic marker mapping of genes for bacterial wilt resistance in tomato, in: Bacterial Wilt, ACIAR Proceedings, No. 45. G. L. Hartman, G. L., A.C. Hayward (eds.) (Kaoshiung, Taiwan, October, 1992) pp. 170-175.
  22. Boutin, S.R., Young, N.D., Shoemaker, R., Lorenzen, L. (1993) SupergeneTM software assists DNA marker analysis via graphical display. Probe 3: 9-11.
  23. Concibido, V.C., Denny, R.L., Boutin, S.R., Hautea, R., Orf, J.H., Young, N.D. (1993) RFLP mapping of cyst nematode resistance genes in soybeans. Soybean Genetics Newsletter 20: 136-139.
  24. Fatokun, C.A., Danesh, D., Young, N.D. (1993) RFLP linkage map for cowpea (Vigna unguiculata (L.) Walp.) in: Genetic Maps, 1992. S. J. O'Brien, ed. Cold Spring Harbor Press, Cold Spring Harbor, NY, pp. 6.256-6.258.
  25. Menancio-Hautea, D., Kumar, L., Danesh, D., Young, N.D. (1993) RFLP linkage map for mungbean (Vigna radiata (L.) Wilczek) in: Genetic Maps, 1992. S. J. O'Brien, ed. Cold Spring Harbor Press, Cold Spring Harbor, NY, pp. 6.259-6.260.
  26. Young, N.D. (1993) Some considerations on the possibility of horizontal gene transfer from genetically engineered tomatoes to bacteria. Proceedings of the Workshop on the Safeguards of the Planned Introduction of Transgenic Tomatoes. (Davis, California, August, 1992) pp. 35-37.
  27. Boutin, S.R., Ansari, H., Concibido, V., Denny, R., Orf, J., Young, N.D. (1992) RFLP analysis of cyst nematode resistance in soybeans. Soybean Genetics Newsletter 19: 123-127.
  28. Fatokun, C.A., Young, N.D. (1992) RFLP mapping of agronomic traits in grain legumes. Proceedings of the Miami Biotechnology Winter Symposium - Advances in Gene Technology: Feeding the World in the 21st Century. (January, 1992, Miami, Florida) p. 89.
  29. Young, N.D. (1992) HyperGene: software for DNA-based "graphical genotypes." Probe 1: 18.
  30. Young, N.D., Tanksley, S.D. (1989) Graphics-based whole genome selection using RFLPs, in: Current Communications in Molecular Biology: Development and Application of Molecular Markers to Problems in Plant Genetics. T. Helentjaris, B. Burr, eds. Cold Spring Harbor Press, Cold Spring Harbor, NY, pp. 123-129.
  31. Young, N.D., Palukaitis, P., Zaitlin, M. (1987) Characterization of multimeric forms of cucumber mosaic virus satellite RNA, in: Molecular Strategies for Crop Protection. C. Arntzen, C. Ryan, eds. Alan R. Liss, New York, NY, pp. 243-252.
  32. Flores, H., Young, N.D., Galston, A.W. (1985) Polyamine metabolism and plant stress, in: Cellular and Molecular Biology of Plant Stress. J. Key, T. Kosuge, eds. Alan R. Liss, New York, NY, pp. 93-114.

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Abstracts (1989 to present):

  1. Young, N.D., Mudge, J., Sadowsky, M.J., Tiffin, P.L., Harrison, M.J., Martinez-Vaz, B.M., May, G.D. (2009) A Medicago truncatula Hapmap as a platform for exploring the genetics of symbioses. Model Legume Congress, Asilomar, CA, July 2009.
  2. Mudge, J., Miller, N.A., Ben, C., Gentzbittel, L., Huntley, J., Denny, R., Wang, X., Farmer, A.D., Young, N.D., May, G.D. (2009) Solexa resequencing and SNP identification in Medicago truncatula genotype F83.005. Plant and Animal Genome, San Diego, CA, January 2009.
  3. Bharti, A. K., Wang, X., Cannon, S. B., Young, N. D. (2008) Exploring genome evolution in legumes with a focus on Medicago truncatula. Plant and Animal Genome Meeting XV, San Diego CA, January, 2007. 4th International Legume Genomics and Genetics Congress, Puerto Vallarta, Mexico, December 2008.
  4. Febrer, M., Cheung, F., Town, C.D., Cannon, S. B., Young, N.D., Abberton, M.T., Jenkins, G., Milbourne, D. (2008) Microsynteny between white clover and Medicago truncatula revealed by BAC-sequencing. Plant and Animal Genome XVI, San Diego, CA, January 2008.
  5. Mudge, J.; Denny, R.; Wang, X.; Ben, C.; Gentzbittel, L.; Young, N. D,; May, G. D. (2008) Solexa resequencing and SNP identification in Medicago truncatula. 4th International Legume Genomics and Genetics Congress, Puerto Vallarta, Mexico, December 2008.
  6. Young, N. D., Roe, B. A., Town, C. D. (2008) The Medicago truncatula genome. 4th International Legume Genomics and Genetics Congress, Puerto Vallarta, Mexico, December 2008.
  7. Young, N.D., Roe, B.A., Town, C.D. (2007) The genome sequence of Medicago truncatula. Model Legume Congress, Tunis, Tunisia, March 2007.
  8. Young, N.D., Town, C.D., Roe, B.A. (2007) Finishing the sequence of euchromatin in the model legume, Medicago truncatula. Plant and Animal Genome Meeting XV, San Diego CA, January, 2007.
  9. Wang, B.B., Cannon, S.B., Sterck, L., Wang, S., Roe B.A., Town, C.D., Van de Peer, Y., Young, N.D. (2007) Synteny blocks are mostly small and fragmented in comparisons between Medicago and other sequenced angiosperms. Plant and Animal Genome Meeting XV, San Diego CA, January, 2007.
  10. Hyten. D.L., Choi, I.Y., Song, Q., Yoon, M.S., Specht J.E., Nelson, R.L., Carter, Jr., T.C., Chase, K., Young, N., Lark. G., Shoemaker, R.C., Cregan, P.B. (2007) An assessment of genome-wide linkage disequilibrium in soybean. Plant and Animal Genome Meeting XV, San Diego CA, January, 2007.
  11. Ameline-Torregrosa, C., S.B. Cannon, R. Denny, B. Chacko, E. Cannon, R. Bretzel, J. Mudge, M. Siegfried, T. Ashfield, B. Roe, R. Innes, N.D. Young. (2006) Comparative genomic approaches to decipher the evolution of R genes in the Rpg1 locus in soybean and and homologous regions in Medicago and Lotus. Plant and Animal Genome Meeting XIV, San Diego CA, January, 2006.
  12. Cannon S.B., Rombauts S., Sterck L., Mudge J., Wang X., Sato S., Vasdewani J., Cheung F., Oldroyd G., Cook D., Van de Peer Yves Y., Roe B.A., Town C.D., Tabata S., Young N.D. (2006) A sequence-based comparison of the Medicago and Lotus genomes. Plant and Animal Genomes XIV, San Diego, CA, January, 2006, W145.
  13. Metcalf M., Ashfield T., Wawrzynski A., Mohan M., Pfeil B., Denny R., Ameline-Torregrosa C., Cannon S., Ratnaparkhe M., Mammadov J., Seigfreid M., Doyle J., Roe B., Maroof S., Young N.D., Innes R.W. (2006) Comparative analysis of legume genome evolution in the vicinity of the Rpg1-b disease resistance gene. Plant and Animal Genomes XIV San Diego, CA, January, 2006, W150.
  14. Wang, B.B., O'Toole, M. Young, N. (2006) Identification of alternative splicing events in legume plants. American Society of Plant Biology. Boston, MA, August, 2006.
  15. Young N.D., Cannon S.B., Retzel E, Town C.D., Roe B.A. (2006) Sequencing the gene-rich euchromatin of the model legume, Medicago truncatula. Plant and Animal Genomes XV, San Diego, CA, January, 2006, P415.
  16. Young N.D., Roe, B.A., Town, C.D. (2006) The Medicago truncatula genome sequence as a reference for legume genomics. American Society of Plant Biology. Boston, MA, August, 2006.
  17. Ashfield T., Howell S., Campo S.D., Brown C ., Nobuta K., Dalwani A., Mohan M., Pfeil B., Canon S., Seigfreid M., Doyle J., Maroof S., Roe B., Young N.D., Innes R. (2005) Comparative analysis of legume genome evolution in the vicinity of the Rpg1-B disease resistance gene. Plant and Animal Genomes XIII, San Diego, CA, January, 2005, P439
  18. Cannon S., Makarevich G., Savage E., Denny R., Mudge J, Seigfried M, Lai H., Ashfield T. , Roe B.A., Young N.D., Innes R. (2005) A phylogenetic and structural comparison of homologous Rpg1 R-gene-containing regions in soybean and Medicago truncatula. Plant and Animal Genomes XIII, San Diego, CA, January, 2005, P437
  19. Choi H.K., Mun J.M., Zhu H., Kim D.J., Baek J.M., Roe B., Mudge J., Young N.D., Doyle J., Ellis N., Kiss G., Cook D.R (2005) Comparative genome analysis in legumes. Model Legume Congress 2005, Asilomar, CA. S46.<
  20. Choi H.Y., Mun J.H., Zhu H., Kim D.J., Baek J.M., Roe B. ,Young N. D., Doyle J., Ellis N., Kiss G., Cook D.R. (2005) Comparative genome analysis in model and crop legumes: conservation and divergence in genome structure at macro- and micro-synteny levels, and utility of cross-species gene-specific markers as phylogenetic tools. Plant and Animal Genomes XIII, San Diego, CA, January, 2005, P424.
  21. Foster-Hartnett D., Danesh D., Penuela S., Sharopova N., VandenBosch K.A., Young N.D., Samac D.A. (2005) Using microarray analysis to identify genes associated with basal resistance and the hypersensitive response (HR) in Medicago truncatula. Model Legume Congress 2005, Asilomar, CA. P54.
  22. Heuer M., Crow J., Johnson J., Lamblin A.F., Cannon S., Young N.D., Retzel E.F. (2005) Integrating genomic data in Medicago truncatula. Model Legume Congress 2005, Asilomar, CA. S40.
  23. Mudge J., Cannon S.B, Abell A.L., Roe B.A., Peter Kalo P., Oldroyd G.E.D, Town C.D., Young N.D.(2005) Hypersyntenic relationships between the soybean, Medicago truncatula, and Arabidopsis thaliana genomes including orthologous and paralogous Medicago truncatula duplicates. Plant and Animal Genomes XIII, San Diego, CA, January, 2005, P425
  24. Town C.D., Roe B.A., Young N.D. (2005) The Medicago truncatula genome initiative: a progress report. Plant and Animal Genomes XIII, San Diego, CA, January, 2005, W078
  25. Young N.D., Roe B.A, Town C.D., Cannon S.B., Mudge J., Wang S, Denny R., Retzel E. (2005) Sequencing the gene space of the model legume, Medicago truncatula. Plant and Animal Genomes XIII, San Diego, CA, January, 2005, P450.
  26. Young N.D., Roe B.A., Town C.D., Cannon S.B., Mudge J., Wang X., Vasdewani J., Chacko B., Denny R., Retzel E. (2005) Sequencing the genespace of the model legume, Medicago truncatula. Model Legume Congress 2005, Asilomar, CA. S49.
  27. Cannon, S.B., Mitra, A., Baumgarten, A., Young, N.D., May, G. (2004) The fates of segmental and tandem gene duplications in large Arabidopsis thaliana gnee famailies. Plant and Animal Genome Conference XII. San Diego, CA, January 2004. P-513
  28. Marek, L.F., Mudge, J., Nadja, H., Denny, R., Howe, D.K., Retzel, E. Young, N.D., Shoemaker, R. C. (2004) Genome characterization in soybean: BAC-end sequence analysis. Plant and Animal Genome Conference XII. San Diego, CA, January 2004. P-531
  29. Mun, J.H., Kim, D.J., Gish, J., Huguet, T., Roe, B., Retzel, E., Young, N., Cook, D. R. (2004) Development of a sequence-ready physical map in Medicago truncatula. Plant and Animal Genome Conference XII. San Diego, CA, January 2004. P-552
  30. Mudge, J., Cannon, S.B., Lamblin, A.F., Crow, J., Kim, D.J., Cook, D.R., Roe, B.A., Town, C.D., Retzel, E., Young, N.D. (2004) MtBR: A BAC registry supporting the Medicago truncatula genome sequencing project. Plant and Animal Genome Conference XII. San Diego, CA, January 2004. P-945
  31. Lamblin, A.F., Dwan, C.M.B., Brown, D. E., Freeman, J. L., Roe, B. A., Cook, D. R., Young, N. D., VandenBosch, K. A., Retzel, E. F. (2004) Automated annotation and display of Medicago truncatula genome sequence data using Ensembl. Plant and Animal Genome Conference XII. San Diego, CA, January 2004. P-946
  32. Roe, B. A., Kim, D. J., Young, N. D., Cook, D. R. (2004) Insights about the Medicago truncatula genome based on extensive BAC sequencing Plant and Animal Genome Conference XII. San Diego, CA, January 2004. W-62.
  33. Young, N. D., Roe, B. A., Town, C. D., Kim, D.J., Cannon, S. B., Retzel, E., Cook, D. R. (2004) Sequencing the gene space of the model legume, Medicago truncatula. Plant and Animal Genome Conference XII. San Diego, CA, January 2004. W-65.
  34. Young, N.D. Cannon, S.B., Mudge, J., Wang, X., Ahmed, A. (2004) Sequencing the gene space of the model legume, Medicago truncatula. SOY 2004, Columbia, MO, August, 2004.
  35. Young, N.D., Roe, B.A., Town, C.A., Cannon, S. B., Retzel, E. (2004) Sequencing the gene space of the model legume, Medicago truncatula. International Congress of Legume Genetics and Genomics, Dijon, FR, June, 2004.
  36. Cannon S.B, Baumgarten A., May G., Young N.D. (2003) The relative importance of segmental and tandem duplications in gene family evolution in Arabidopsis thaliana. Plant and Animal Genome Conference XI. San Diego, CA, January 2003. P-150.
  37. Choi, H.K., Kim, D.J., Baek, J.M., Ellis, T.H.N., Young, N.D., Kiss, G., Cook, D.R. (2003) Development of cross-species gene-specific markers and comparative genome study within the papilionoideae subfamily. Plant and Animal Genome Conference XI. San Diego, CA, January 2003. P-498.
  38. Choi, H.K., Kim, D.J., Zhu, H., Mun, J.-H., Baek, J.-M., Roe, B., Young, N.D., Luckow, M.A., Doyle, J., Ellis, T.H.N., Kiss, G., Cook, D.R. (2003) Comparative genome analysis in legumes: Use of phylogenetic tools, genetic mapping, and megabse-scale genome sequencing to assess the conservation of genome structure within the Papilionoideae. Medicago Genomics: New Tools for Legume Biology and Breeding. Toulouse, France, November, 2003. P. 14.
  39. Jackson, S.A., Pagel, J., Young, N. (2003) Molecular cytogenetic integration of the soybean genetic and physical maps. Plant and Animal Genome Conference XI. San Diego, CA, January 2003. W-232
  40. Marek, L.F., Mudge, J., Hanson, N. Larsen, D., Denny, R., Paule, C., Retzel, E., Young, N.D., Shoemaker, R.C. (2003) Soybean repetiive sequence anchored to the soybean genetic map. Plant and Animal Genome Conference XI. San Diego, CA, January 2003. P-479.
  41. Mun, J.-H., Kim, D.J., Gish, J., Huguet, T., Roe, B., Retzel, E., Young, N.D., Cook, D.R. (2003) Strutural genomics of Medicago truncatula: Development of a sequence-ready physical map. Medicago Genomics: New Tools for Legume Biology and Breeding. Toulouse, France, November, 2003. P. 14.
  42. Yan, H., Mudge, J. , Kim, D.J., Shoemaker, R.C., Cook, D.R., Young, N.D. (2003) Comparative physical mapping revealed extensive microsynteny among three sets of homeologous regions in the Glycine max and Medicago truncatula genomes. Plant and Animal Genome Conference XI. San Diego, CA, January 2003. P-487.
  43. Young, N.D., Roe, B.A, Town, C.D., Kim, D.J., Cannon, S.B., Retzel, E., Cook, D.R. (2003) Sequencing the gene space of the model legume, Medicago truncatula. Medicago Genomics: New Tools for Legume Biology and Breeding. Toulouse, France, November, 2003. P. 16.
  44. Choi, H.K., Kim, D.J., Baek, J.M., Ellis, N., Young, N.D., Cook, D.R. (2002) The development of cross-genome gene-specific genetic markers and comparative genome study within the papilionoideae sub-family. First International Conference on Legume Genomics and Genetics (Minneapolis, MN, June, 2002). P94.
  45. Danesh, D., Shekhawat, N.P., Cardinet, G., Thoquet, P., Mudge, J., Penuela, S., Kim, D.J., Kiss, G., Choi, H., Limpens, E., Zeyen, R., Huguet, T., Cook, D.R., Young, N.D. (2002) Integrated microsatellite marker mapping and powdery mildew resistance In Medicago truncatula. Plant and Animal Genome Conference XI. San Diego, CA, January 2002.
  46. Li, Y., Chen, S.Y., Bushnell, W.B., Young, N.D. (2002) The effect of the rhg1 gene on the development and reproduction of Heterodera glycines Race 3. Proceedings of the 6th Biennial Conference on the Molecular and Cellular Biology of the Soybean. (Urbana, IL, August, 2002).
  47. Mudge, J., Larsen, L., Denny, R., Staggs, R., Retzel, E., Young, N. (2002). Coalescing BAC contigs anchored to the soybean genetic map. Plant and Animal Genome Conference XI. San Diego, CA, January 2002.
  48. Penuela, P., Endre, G., Danesh, D., Young, N.D., Vandenbosch, K., Samac, D.A. (2002) Functional genome analysis of pathogen interactions of Medicago truncatula. Plant and Animal Genome Conference XI. San Diego, CA, January 2002.
  49. Samac, D.A., Danesh, D., Young, N.D. (2002) Pathosystem development in the model legume Medicago truncatula. First International Conference on Legume Genomics and Genetics (Minneapolis, MN, June, 2002). P82.
  50. Yan, H., Mudge, J., Kim, D.J., Shoemaker, R.C., Cook, R.C., Young, N.D. (2002) Restriction map-based comparisons among duplications in the soybean genome and between soybean and Medicago truncatula. First International Conference on Legume Genomics and Genetics (Minneapolis, MN, June, 2002). P95.
  51. Zhu, H., Cannon, S.B., Uribe, P., Xu, K., Young, N.D., Cook, D.R. (2002). Genome organization and evolution of Medicago truncatula resistance genes. First International Conference on Legume Genomics and Genetics (Minneapolis, MN, June, 2002), P45.
  52. Cannon, S., Zhu, H., Penuela, S., Spangler, R., May, G., Cook, D., Young, N.D. (2001) A field guide to NBS-LRR resistance gene analogs in four plant families. Plant and Animal Genome Conference IX. San Diego, CA, January 2001. P5a_11.
  53. Danesh, D., Narpat S. Shekhawat, N. S., Cardinet, G., Thoquet, P., Kim, D.J., Kiss, G., Choi, H., Limpens, E., Santoni, S., Prosperi, J.-M., Huguet, T., Cook, D.R., and Young, N.D. (2001) Integrating molecular linkage maps of Medicago truncatula using microsatellite markers. Plant and Animal Genome Conference IX. San Diego, CA, January 2001. P5f_06.
  54. Foster-Hartnett, D., Danesh, D. , Denny, R., , Penuela, S., Ped, K., Mudge, J., Marek, L., Shoemaker, R., Young, N.D. (2001) A detailed analysis of a 10 cM region of the soybean genome. Plant and Animal Genome Conference IX. San Diego, CA, January 2001. P5f_06.
  55. Li, Y. H., Chen, S. Y., Young, N. D., Orf, J. H. (2001) Effect of the rhg1 gene on life cycle of the soybean cyst nematode rhg1 gene (Leguminosae) Phytopathology. 91(6 Supplement). S137-S138.
  56. Marek, L., Mudge, J., Laura Darnielle, David Grant, Nadja Hanson, Margie Paz, Yan, H., Denny, R., Larson, K., Foster-Hartnett, D., Cooper, A., Danesh, D., Schmidt, T., Staggs, R., Crow, J., Retzel, E., Young, N.D., Shoemaker, R. (2001) Soybean genomic survey: BAC-end sequences near RFLP and SSR markers. Plant and Animal Genome Conference IX. San Diego, CA, January 2001. W35_04.
  57. Mudge, J., Marek, L., Yan, H., Denny, R., Larson, K., Foster-Hartnett, D., Cooper, A., Danesh, D., Darnielle, L., Grant, D., Hanson, N., Paz, M., Schmidt, T., Staggs, R., Crow, J., Retzel, E., Young, N.D., Shoemaker, R. (2001) Surveying the soybean genome: BAC contigs and BAC-end sequences near RFLP and SSR markers. Plant and Animal Genome Conference IX. San Diego, CA, January 2001. P01_34.
  58. Mudge, J., Young, N.D. (2001) A simple and flexible genomics database for biologists. Plant and Animal Genome Conference IX. San Diego, CA, January 2001. P9a_10.
  59. Vodkin, L., Shoemaker, R., Keim,P., Polacco, J., Young, N.D., Retzel, E. (2001) Soybean functional genomics. Plant and Animal Genome Conference IX. San Diego, CA, January 2001. W35_05.
  60. Yan, H., Kim, D., Mudge, J., Cook, D., Young, N.D. (2001) Microsynteny exists between soybean and Medicago truncatula and within the soybean genome. Plant and Animal Genome Conference IX. San Diego, CA, January 2001. P5a_04.
  61. Young, N.D. (2001) Medicago truncatula as a model for crop legume genomics. 4th International Conference on Medicago truncatula, Madison, WI, July, 2001.
  62. Young, N.D., Yan, H., Mudge, J., Kim, D., Cook, D. (2001) Global Estimates of Microsynteny among Soybean, Medicago truncatula, and Arabidopsis thaliana. Plant and Animal Genome Conference IX. San Diego, CA, January 2001. W35_06.
  63. Danesh, D., Grivna, S., Foster-Hartnett, D., Penuela, S., Larson, K., Mudge, J. Denny, R.L., Cooper, A., Young, N.D. (2000) Limiting factors in chromosome walking around rhg1, a major cyst nematode resistance locus in soybean. Plant and Animal Genome VIII (San Diego, CA, January 2000), p. 86.
  64. Dickerman, A., Sobral, B., Young, N.D. (2000) The NCGR R-genes database. Plant and Animal Genome VIII (San Diego, CA, January 2000), p. 51.
  65. Marek, L. F., Darnielle, L., Hanson, N., Mudge, J., Denny, R., Larson, K., Foster-Hartnett, D., Cooper, A., Danesh, D., Young, N.D., Shoemaker, R.C. (2000) Soybean genomic survey: BAC-end sequence near SSR markers. Plant and Animal Genome VIII (San Diego, CA, January 2000), p. 194.
  66. Mudge, J., Denny, R.L., Larson, K., Foster-Hartnett, D., Cooper, A., Danesh, D. Marek, L.F., Paz, M., Shoemaker, R.C., Young, N.D. (2000) Contig building and BAC end sequencing near RFLPs in the soybean genome. Plant and Animal Genome VIII (San Diego, CA, January 2000), p. 194.
  67. Penuela, S., Cannon, S., Foster-Hartnett, D., Denny, R.L., Danesh, D., Larson, Karin, Cooper, A., Gulya, D., Cook, D., Young, N.D. (2000) Phylogenetic relationships and physical organization in the non-TIR NBS-LRR family of resistance gene analogs in soybean (Glycine max) and Medicago truncatula. Plant and Animal Genome VIII (San Diego, CA, January 2000), p. 124.
  68. Young, N.D., Huihuang, Y., Cannon, S., Penuela, S, Mudge, J., Denny, R.L., Larson, K., Cooper, A., Danesh, D., Foster-Hartnett, D., Kim, D., Zhu, H., Cook, D. (2000) Global strategies to investigate microsynteny between the genomes of soybean and Medicago truncatula. Molecular Genetics of Model Legumes (Norwich, UK, June, 2000), p.33.
  69. Zhu, H., Uribe, P., Cook, D., Kim, D., Opperman, C., Dhandaydham M., Cannon S., Young, N.D. (2000). Developing Medicago truncatula as a reference system for legume-pathogen interactions. Molecular Genetics of Model Legumes (Norwich, UK, June, 2000), p.27.
  70. Boehlke, E. G., Mudge, J., Denny, R.L., Orf, J.H., Cregan, P., Young, N.D. (1999) Comparison between marker assisted selection for rhg1 and greenhouse screening. (Orlando, FL, January 1999).
  71. Danesh, D., Ped, K., Foster-Hartnett, D., Penuela, S., Mudge, J., Denny, R.L., Young, N.D. (1999) Critical factors in constructing an EcoRI BAC library for soybean. Plant and Animal Genome VII (San Diego, CA, January 1999), p. 98.
  72. Dickerman, A.W., Pecherer, R.M., Young, N.D., Stamper, D.E., Sobral, B.W. (1999) Plant disease-resistance gene database. Plant and Animal Genome VII (San Diego, CA, January 1999), p. 76.
  73. Grimm, D. R., Danesh, D., Mudge, J., Young, N.D., Cregan, P. B. (1999) Assessment of single nucleotide polymrophisms (SNPs) in soybean. Plant and Animal Genome VII (San Diego, CA, January 1999), p. 140.
  74. Penuela, S., Foster-Hartnett, D., Danesh, D., Denny, R.L., Ped, K., Mudge, J., Young, W., Coryell, V., Keim, P., Young, N.D. (1999) Physical isolation and sequence analysis of the region around rhg1, a major cyst nematode resistance locus in soybean. Plant and Animal Genome VII (San Diego, CA, January 1999), p. 98.
  75. Shoop, E., Retzel, E., Gulya, D., Grant, D., Foster-Hartnett, D., Polacco, J., Silverstein, K., Vodkin, L., Imsande, M., Young, N., Keim, P., Shoemaker, R., St. Cyr, S., Sim, S., Raph, T. (1999) An informatics infrastructure for functional and comparative genomic studies in soybean. Plant and Animal Genome VII (San Diego, CA, January 1999), p. 79.
  76. Vodkin, L, Erpelding, J., Coryell, V., Khanna, A., Polacco, J., Young, N., Retzel, E., Keim, P., Shoemaker, R. (1999) Soybean structural and functional genomics project: an update. Plant and Animal Genome VII (San Diego, CA, January 1999), p. 56.
  77. Young, N.D., Dickerman, A.W., Pecherer, R.M., Sobral, B.W. (1999) Comparative genomics and bioinformatics of disease resistance genes. Plant and Animal Genome VII (San Diego, CA, January 1999), p. 30.
  78. Young, N.D., Mudge, J., Boehlke, E., Denny, R.L., Fickus, E.W., Cregan, P., Orf, J.H. (1999) Microsatellite-based screening for soybean cyst nematode resistance. American/Canadian Phytopathological Society Annual Meeting (Montreal, CN, August, 1999).
  79. Coryell, V., Danesh, D., Meksem, K., Foster-Hartnett, D.M., Pantazopoulos, P., Young, W., Chancharochenchai, K., Busch, J.D., Penuela, S., Schup, J. M., Denny, R.L., Cregan, P.B., Lightfoot, D., Keim, P., Young, N.D. (1998) High resolution mapping near the rhg1 SCN resistance locus. Plant and Animal Genome VI (San Diego, CA, January 1998), p. 136.
  80. Danesh, D., Foster-Hartnet, D., Penuela, S., Mudge, J., Denny, R.L., Young, N.D. (1998) Bacterial artificial chromosome end isolation, sub-cloning, and chromosome walking for positional cloning of a cyst nematode resistance gene in soybean. Plant and Animal Genome VI (San Diego, CA, January 1998), p. 82.Danesh, D., Penuela, S., Concibido, V.C.,
  81. Nordstrom, H., Young, N.D. (1997). Construction and screening of a soybean bacterial artificial chromosome (BAC) library and identification of clones linked to a major soybean cyst nematode (SCN) resistance locus. Plant and Animal Genome V (San Diego, CA, January 1997), p. 45.
  82. Mudge, J., Concibido, V.C., Denny, R.L., Young, N.D., Orf, J.H. (1997) Tools for analyzing soybean cyst nematode resistance and accompanying agronomic traits. Agronomy Abstracts 1997, in press.
  83. Peñuela, S., Dariush D., Concibido, V., Young, N. D. (1997) Physical mapping and bacterial artificial chromosome clones near the major cyst nematode resistance locus in soybean. Plant and Animal Genome V (San Diego, CA, January 1997), p. 58.
  84. Martinez, J.P., Groth, J.V., Young, N.D. (1996) Speciation in Andean and Mesoamerican bean rust fungi. Phytopathology 86: S32.
  85. Mudge, J., Young, N.D., Kenworthy, W.J., Kenworthy, J.P., Cregan, P.B. (1996) Simple sequence repeat (SSR) markers that flank the major soybean cyst nematode resistance gene. Proceedings of the 6th Biennial Conference on the Molecular and Cellular Biology of the Soybean. (Columbia, MO, August, 1996), p. 24.
  86. Mudge, J., Orf, J., Concibido, V.C., Denny, R.L., Young, N.D. (1996) Genetic mapping of a yield depression locus near a major soybean cyst nematode resistance gene. Proceedings of the 6th Biennial Conference on the Molecular and Cellular Biology of the Soybean. (Columbia, MO, August, 1996), p. 30P.
  87. Young, N. (1996) Genome analysis of soybean cyst nematode resistance in soybean. Plant Genome IV (San Diego, CA, January 1996), p. 21.
  88. Young, N. (1996) Marker-assisted selection for partial-resistance. Colloquium on Lowering the Barriers to Use of Quantitative Disease Resistance at the annual meeting of the American Phytopathological Society, (Indianapolis, IN, July, 1996), p. 130.
  89. Concibido, V., Denny, R., Lange, R., Danesh, D., Orf, J., Young, N.D. (1995) A common soybean cyst nematode resistance gene. Phytopathology 85.
  90. Martinez, J. P., Young, N. D., Groth, J. V. (1995) Characterization of a repetitive DNA sequence found only in some populations of the bean rust fungus (Uromyces appendiculatus). Phytopathology: 85: 1132.
  91. Young, N.D., Concibido, V., Danesh, D., Denny, R., Boutin, S., Lange, D. (1995). Genome mapping in legumes: insights into molecular evolution, gene mapping, and positional cloning. Plant Genome III (San Diego, CA, January 1995), p. 13.
  92. Boutin, S., Olson, T., Yu, Z., Young, N.D., Shoemaker, R., and Valleijos, E. (1994) Substantial genome conservation among legume genera detected with DNA markers. Plant Genome II (San Diego, CA, January 1994).
  93. Concibido, V., Denny, R., Danesh, D., Orf, J., Young, N.D. (1994) High resolution mapping and race specificity of a partial resistance gene for soybean cyst nematode. Proceedings of the 5th Biennial Conference on the Molecular and Cellular Biology of the Soybean. Athens, GA. p. 36.
  94. Martinez, J., Groth, J., Young, N.D. (1994) Segregation and phylogenetic data suggest speciation may be occurring within Uromyces appendiculatus. Phytopathology 84: 1096.
  95. Concibido, V., Denny, R., Orf, J., Young, N.D. (1993) DNA mapping of resistance genes to soybean cyst nematode (SCN). Agronomy Abstracts 1993, p. 174.
  96. Erickson, S., Denny, R., Young, N.D. (1993) Differentiating populations of Heterodera glycines with "RAPD" markers. Society of Nematology Molecular Biology Newsletter - Volume 5.
  97. Young, N.D. (1993) Marker-assisted breeding for multigenic disease resistance. Agronomy Abstracts 1993, p. 185.
  98. Boutin, S., Lorenzen, L., Shoemaker, R., Young, N.D. (1992) Computer generated graphical genotypes and DNA marker pedigrees. Proceedings of the 4th Biennial Conference on Molecular and Cellular Biology of Soybean (July, 1992, Ames, Iowa) p. 35.
  99. Concibido, V., Boutin, S., Denny, R., Ansari, H., Orf, J., Young, N.D. (1992) RFLP mapping of cyst nematode resistance genes in soybean (Glycine max). Proceedings of the 4th Biennial Conference on Molecular and Cellular Biology of the Soybean. (July, 1992, Ames, Iowa) p. 14.
  100. Lorenzen, L., Young, N.D., Specht, J., Shoemaker, R. (1992) RFLP pedigree analysis of soybean cultivars. International Crop Science Congress. July, 1992, Ames, Iowa.
  101. Young, N.D., Menancio-Hautea, D., Fatokun, C., Kumar, L., Danesh, D., Shoemaker, R. (1992) Parallel RFLP mapping in soybean (Glycine max), mungbean (Vigna radiata), and cowpea (V. unguiculata). Proceedings of the 4th Biennial Conference on Molecular and Cellular Biology of Soybean. (July, 1992, Ames, Iowa) p. 31.
  102. Aarons, S., Young, N.D. (1991) Identification of genes for resistance to bacterial wilt in tomato using RFLPs. Phytopathology 81: 1208.
  103. Danesh, D., Young, N.D. (1991) Genetics of resistance in mung beans (Vigna radiata) to powdery mildew (Erysiphe polygoni). Phytopathology 81: 1208.
  104. Gieser, P., Young, N.D. (1991) Isolation of fungal DNA greater than 200 kilobases using standard extraction methods. Phytopathology 81: 1219.
  105. Martinez, J., Groth, J., Young, N.D. (1991) Development of a restriction fragment length polymorphism (RFLP) map for Uromyces appendiculatus. Phytopathology 81: 1208.
  106. Young, N.D., Danesh, D. (1991) RFLP analysis of complex interactions between mung bean (Vigna radiata) and powdery mildew (Erysiphe polygoni). Phytopathology 81: 1208.

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